Shiny app to browse hibernating ground squirrel brain tissue RNA-seq data, new genome assembly and transcriptome annotation.
Tested on macOS/Win10/Linux, with R3.6 and R4.0.
Please see manuscript published in Frontiers in Physiology.
Alternatively, download all files of this repo, and run app in RStudio. shiny::runApp(folder_location)
All packages required are listed at the start of global.R
docker load --input squirrelbox_docker.tar
docker run --rm -p 80:80 squirrelbox_docker
or find latest repo in dockerhub
Here is one example of data exploration.